YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260534, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKELHTFGWY AARVSPHLPK KAFKPVPTRL FGGLAYLLVA LAGLISIGVF ELNVWANLGI  60
   61 AIVLGLCFAS LGFLGHEILH GTVVRKAWLR DFLGAIAFMP LSTGPKLWRK WHNATHHVHT 120
  121 QHEENDPDAW PTLEKLKKSK FLSWVYRMPL HVRSFFSFLS LTIQFTLHST RMFFHFIKEF 180
  181 KSSNQKSVWL QLLLPWTVWI SLLFIMGPGK WLFAYVIPLL IANFIVMAYI ATNHRLNPIV 240
  241 PVNDPLANCL SVTVPRWVDV LHFNFSYHTE HHLFPAMSSK YYPLVKEKIK EMWPERYHEM 300
  301 PMTKALAALW NTPRVYYQGS ELVDPHREHF YGSLGNGLDP HNISYREEHI EEEESIKKVN 360
  361 Q

Type	Start	End	Confidence
Cytoplasmic	1	29	0.94
Transmembrane Helix	30	50	0.93
Non-Cytoplasmic	51	57	0.70
Transmembrane Helix	58	76	0.96
Cytoplasmic	77	86	0.82
Transmembrane Helix	87	108	0.85
Non-Cytoplasmic	109	149	0.94
Transmembrane Helix	150	168	0.90
Cytoplasmic	169	187	0.79
Transmembrane Helix	188	206	0.95
Non-Cytoplasmic	207	211	0.77
Transmembrane Helix	212	232	0.92
Cytoplasmic	233	361	0.95