YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51978310, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.98
Transmembrane Helix	54	74	0.92
Non-Cytoplasmic	75	80	0.72
Transmembrane Helix	81	98	0.94
Cytoplasmic	99	245	0.98
Transmembrane Helix	246	267	0.92
Non-Cytoplasmic	268	278	0.80
Transmembrane Helix	279	303	0.86
Cytoplasmic	304	674	0.98
Transmembrane Helix	675	697	0.94
Non-Cytoplasmic	698	703	0.83
Transmembrane Helix	704	723	0.91
Cytoplasmic	724	744	0.88
Transmembrane Helix	745	769	0.90
Non-Cytoplasmic	770	790	0.92
Transmembrane Helix	791	811	0.93
Cytoplasmic	812	829	0.89
Transmembrane Helix	830	852	0.90
Non-Cytoplasmic	853	864	0.73
Transmembrane Helix	865	882	0.92
Cytoplasmic	883	888	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNWYSKTKD QTLIDLETNE QHGLTEEIVN ERLTQYGANE LATKQKRSLW QRIFAQINDV  60
   61 LVYVLIIAAL ISAFVGEWAD ASIIALVVVL NAVIGVVQES KAEQALEALK KMATPKAIVK 120
  121 RDGELKEIPS EHVVPGDIVM LDAGRYIPCD LRLIETANLK VEESALTGES VPVDKDAIYH 180
  181 PSMQSDEQVP LGDQKNMAFM STLVTYGRGV GIAVETGMNS QIGKIATLLH EADDDMTPLQ 240
  241 KSLAQVGKYL GFVAVAICIV MFLIGFLQGR DTLEMFMTAI SLAVAAIPEG LPAIVSIVLA 300
  301 IGVQRMIKQN VIIRKLPAVE ALGSVTIICS DKTGTLTQNK MTVTHFYSDN TYDHLESLNV 360
  361 NNDAQRLLLE NMVLCNDASY NNQSQTGDPT EIALLVAGST FNIQKDHLEK IHERVNELPF 420
  421 DSDRKMMSTV HTYDKSYYSM TKGAIDKLLP LCTHIFKNGK IESLTEDDKN QILEAAGAMS 480
  481 QEALRVLSFA FKQYNSNDVD IDHLEENLIF IGLVGMIDPP RTEVKDSISE CKKAGIRTVM 540
  541 ITGDHKDTAF AIAKELGIAE DISEIMIGTE LDNISDTELA SKIDHLHVFA RVSPEHKVKI 600
  601 VKALRAKGNI VSMTGDGVND APSLKQADVG VAMGITGTDV AKGAADVVLT DDNFSSIVKA 660
  661 VEEGRNIYRN IKKSILFLLS CNFGEIITLF LAILLGWATP LRPIHILWVN LITDTLPALS 720
  721 LGVDPEDPDV MKEKPRHAKE SLFSGSVPFL IFNGVVIGLL TLIAFIAGAK FYTGDTNLFP 780
  781 LFPERIDEDA LLHAQTMAFV VLSFSQLVHS FNLRSRTKSI FSIGIFTNKY LVFSLLIGVL 840
  841 MQVCIISIPP LANIFGVHAL TMRDWGFVLL LSIIPLVVNE IIKLVKKN