YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30260820, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWLLILVA CMMVITAGCS MEPPEWAKDS SDKGRNKTIK VGFSVSTLNN PFFVTLKKGA  60
   61 EKKAKESGIE LIAVDAQNDA AKQTNDVEDL IQKGVDVVVI NPTDSDAVAS AVSAANAANV 120
  121 PVITVDRVAN SGKVVSHIAS NNIEGGQMAS DYIRELVGEG ANVAELEGIP GSSAARERGK 180
  181 GFHNVADKSL KVVAKQAADF DRAKGLSVME NILQANGDIK AVFAHNDEMA LGALEALKSA 240
  241 GKTDVVVVGF DATEDAVKAV NDGRMAATVA QKPELIGEKA MQTAKEITQG KKVDKSIPIE 300
  301 LELIKKNK

Type	Start	End	Confidence
Signal Peptide	1	19	0.98
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	308	0.99