YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254300, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALDKSLPL EYQSEQSRLN ILGFWIFLGA EIMLFATLFA SYLVLAGRTA DGPTPAQLFE  60
   61 LKTLLIQTLL LLTSSFTCGI VIHEMRKHNQ KAMLGWFVLT LLLGAGFLFF EIEEFIMYIG 120
  121 EGATIQTSAF LSGFFVLLGT HGAHVTGGII WAICVIIQIL KRGLTPVTAR KVFIISLYWH 180
  181 FLDLVWVFIY TLVYLNGMVA

Type	Start	End	Confidence
Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.93
Non-Cytoplasmic	45	62	0.92
Transmembrane Helix	63	83	0.94
Cytoplasmic	84	91	0.93
Transmembrane Helix	92	112	0.91
Non-Cytoplasmic	113	136	0.85
Transmembrane Helix	137	160	0.85
Cytoplasmic	161	174	0.84
Transmembrane Helix	175	194	0.91
Non-Cytoplasmic	195	200	0.79