YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228588358, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.60
Transmembrane Helix	31	53	0.85
Cytoplasmic	54	68	0.59
Transmembrane Helix	69	91	0.84
Non-Cytoplasmic	92	98	0.50
Transmembrane Helix	99	119	0.80
Cytoplasmic	120	131	0.70
Transmembrane Helix	132	157	0.82
Non-Cytoplasmic	158	179	0.69
Transmembrane Helix	180	199	0.91
Cytoplasmic	200	219	0.73
Transmembrane Helix	220	243	0.86
Non-Cytoplasmic	244	286	0.83
Transmembrane Helix	287	307	0.95
Cytoplasmic	308	318	0.80
Transmembrane Helix	319	340	0.67
Non-Cytoplasmic	341	342	0.46
Transmembrane Helix	343	377	0.71
Cytoplasmic	378	390	0.43
Transmembrane Helix	391	414	0.85
Non-Cytoplasmic	415	436	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGFMSFMEQ KIMPTTQKIA GQRHLLAIRN GVISTLPLTI VGSFFVIFLN LPIDAYMEWI  60
   61 APFRHILDIP FRFTVGLMAL YAAFGVGASL ANFYQLNQLS AGLLSVLAFL LASVEPIQIT 120
  121 KAVPGVIDAG RYISVGTLSA TSLFGAIVTA LIAVEIYHFM IKHNISIKLP DSVPPAVSNS 180
  181 FAALIPTLAV ILLFWGIRYG LKFDVNTTIT YLIAPLKSVL VGNNLFGGLL TVFLIVFFWS 240
  241 FGIHGPAILG PIIRPMWDSA ILENMEVFTA TGNAHQLPNL FTEQFIQWFV WIGGSGSTLA 300
  301 LVIMFMFSKS KFLKELGRLS FVPGLFNINE PIIFGAPIVM NPILIIPFVI TPLVTTTVSY 360
  361 FAVVSGMIPM MMAKLPFTML APIAAIISTD WTIMAGVLVL VNFVISFVIY YPFFKMYEKQ 420
  421 QLAGEEKTEC SEQLSS