YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52144432, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	27	0.90
Non-Cytoplasmic	28	46	0.73
Transmembrane Helix	47	66	0.87
Cytoplasmic	67	75	0.78
Transmembrane Helix	76	95	0.93
Non-Cytoplasmic	96	104	0.83
Transmembrane Helix	105	126	0.88
Cytoplasmic	127	144	0.80
Transmembrane Helix	145	166	0.62
Non-Cytoplasmic	167	182	0.52
Transmembrane Helix	183	203	0.86
Cytoplasmic	204	222	0.48
Transmembrane Helix	223	239	0.48
Non-Cytoplasmic	240	240	0.23
Transmembrane Helix	241	255	0.44
Cytoplasmic	256	305	0.71
Transmembrane Helix	306	328	0.87
Non-Cytoplasmic	329	351	0.83
Transmembrane Helix	352	370	0.97
Cytoplasmic	371	383	0.74
Transmembrane Helix	384	403	0.88
Non-Cytoplasmic	404	423	0.86
Transmembrane Helix	424	443	0.91
Cytoplasmic	444	455	0.81
Transmembrane Helix	456	477	0.91
Non-Cytoplasmic	478	485	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFNSFEFIF LFLPIAFLLY FLLNKFGQTT LAKAWLVAAS LFFYSYWNIK YLPLMLVSLI  60
   61 VNYFIGMKLV KHKSKLLLTV GLIFNIGMLS YFKYYDFFLQ NVNSLFGTHF TLLSLTLPLA 120
  121 ISFYTFQKIA FLVDTYRGET EACHFLDYAL FVTFFPQLIA GPIVHHAQIM PQFADRSKKR 180
  181 WQSNYIALGI FVFAIGIFKK VGIADVLSPV VREGFDVQQS LTFVEAWLSS LAFTFQLYFD 240
  241 FSGYSDMAIG IALMFNIKLP QNFNSPYKAV SIQDFWHRWH MTLSQFLTKY VYISLGGNRK 300
  301 GITRTYVNIM IVFLISGLWH GAGWTFIFWG FLHGLASVVH RLWNKAGGRM PAWAGWFVTF 360
  361 FFINITWVFF RATSMHDAVK VLKGMFGFNG FELANSVFPV FIIEKLQFLK EYGVSFTEAY 420
  421 HVSLLNTEIV AYIFGALCIS FFLKNSIQLK DSFRPTVWTA LFTAILLVYS VLHLTSISEF 480
  481 LYFNF