YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52144365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	100	0.98
Transmembrane Helix	101	119	0.91
Non-Cytoplasmic	120	138	0.76
Transmembrane Helix	139	159	0.90
Cytoplasmic	160	166	0.77
Transmembrane Helix	167	187	0.89
Non-Cytoplasmic	188	209	0.82
Transmembrane Helix	210	233	0.91
Cytoplasmic	234	251	0.87
Transmembrane Helix	252	275	0.90
Non-Cytoplasmic	276	293	0.78
Transmembrane Helix	294	317	0.86
Cytoplasmic	318	328	0.73
Transmembrane Helix	329	352	0.83
Non-Cytoplasmic	353	361	0.83
Transmembrane Helix	362	384	0.88
Cytoplasmic	385	389	0.87
Transmembrane Helix	390	413	0.87
Non-Cytoplasmic	414	433	0.83
Transmembrane Helix	434	457	0.92
Cytoplasmic	458	630	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYEKLAKDI LKHVGGRENI NSVVHCITRL RFQLKDEGKA NTEVLKGMED IVTVMKSGGQ  60
   61 YQVVIGNHVS DVYKAVIAAG GFQETEEESA SEKKKSSLID ILSSIFTPIL GVLAATGMIK 120
  121 GFNALFVALG WLSNESGTYQ ILNAVGDSLF YFFPIFLGYT ASKKFGGSPF IGMAIGGALV 180
  181 YPALSGLKAS EPLYTLFAGT MFESPIHITF LGIPVILMNY ASSVIPIILA AYFGARVENS 240
  241 LKKVIPDVVK TFVLPFLTLL IVVPVTFLVI GPIATWAGQF LGQATLWVYH LSPLVAGALL 300
  301 GAFWQVLVIF GLHWGVVPIG YNNLAVHGID PILALIFAAS FAQIGAVLGV WVKTKDQKLK 360
  361 TLSIPAFISG IFGVTEPAIY GITLPLKKPF IMSCIAGGVG GAILGVFGTQ AYMTGGLGIF 420
  421 TIPTFISPKD GLTAGFWGAI VSMVVSLLVG FILTYLFGFT KKQTSTDTEE TSNKIAASND 480
  481 DEVIFSPFHG VVIPLQNIDD AAFASGALGE GVAIEPSEGK LFSPVSGTIS ALFPTNHAVG 540
  541 ITADSGAEIL IHIGMDTVKL NGEFFSSHIE QGARVEKGQL LIEFHIAEIQ KAGYIVTTPV 600
  601 VVTNYDRYSM KKTEVEKIQA GDSLLKLGVK