YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52144170, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVGKIHTRK LFICFCLAVV LFVPIHTFAD EKREWRDEVI YSIMIDRFNN GEPKNDKQLE  60
   61 VGNLEGYQGG DIRGIIKRLD YIKEMGFTTV MLSPLFESVK YDGVDVRNFQ KVNEHFGTEN 120
  121 DVKELVQEAH AKGMKVIFQF PLGENEQQVI DSMKWWVKEV DLDASYVMHS EKKSPAFWDD 180
  181 VQKDMQVIKK DFRVMTKEDS EYNEKIVESF SKADVSVKSL YDVSKKDEEF ITFLDNQDTK 240
  241 RFARIAKENM NYPPSRLKLA LTYLLTSPGI PNFYYGTEIA LDGGDTPDNR RLMDFKSDEK 300
  301 FMQHITKLGE LRQTRPSLRR GTFELLYDKN GMSVLKRKYK GEVTLVAINN TKETQKVALP 360
  361 ASTIGEKQEL RGLLEDEIIR EENGKFYLVL KREESNVYKV NRETGVNWLF ISLIVGVNVL 420
  421 FITFLIAVKK RRK

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	404	0.99
Transmembrane Helix	405	428	0.90
Cytoplasmic	429	433	0.97