YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261285, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKKRVVITG LGAVTPVGTD VETAWENIKK GVSGIGRLTR IDPELFPAKV AAEINDFEVE  60
   61 KYIDKKEARR MDRFTQYAVA AAKMAVADAK LEITEENGPR IGVWIGSGIG GMETYEEQFK 120
  121 IFTEKGPRRV SPFFVPMMIP DMAAGQVSIA TGAKGINTCS VTACASGANS IGDAFKAIQR 180
  181 GDADAMITGG AEAPLTSMAF AGFSSAKALT FNEDPATACR PFDKNRSGFV MGEGSGILIL 240
  241 EELEHALARG AHIYAEIAGY GATGDAFHIT MPAPGGEGGV RAMRQALADA GLQPEDIDYI 300
  301 NAHGTSTDAN EKYETMAIKE TFGEHAYKVA ISSTKSMTGH LLGAAGAVEA IFSIKSITDG 360
  361 VIPPTINYET PDPECDLDYV PNNARHQEVN AVLSNSLGFG GHNAVLVFKS YK

Type	Start	End	Confidence
Signal Peptide	1	19	0.72
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	412	0.99