YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30254905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYVLKRFV YMALTLFLIT TLTFFLMKLL PGSPLKNQEK LSPAQKEIIL EKYGLNDPVP  60
   61 VQYARYLGNL AKGDLGVSFQ YDNRPVTDMI VDRIGPSAQL GLQAIILGTF IGLILGIVAA 120
  121 LRNNTWVDYG ATIISVLGMS VPSFVFAALL QYFVGVKLGW FPVAFWKGPE FTVMPTIALS 180
  181 MAVIATIARF ARAELIEVMQ ADYILTAKAK GISQGVIIIK HALRNALIPV VTILGPMVAG 240
  241 LITGTLVIEQ IYAVPGLGEQ FVKSITVNDY TVIMGTTIFY SAIFILVIFI VDILYGIIDP 300
  301 RIRLAGGKK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	27	0.96
Non-Cytoplasmic	28	99	0.96
Transmembrane Helix	100	121	0.92
Cytoplasmic	122	130	0.79
Transmembrane Helix	131	153	0.91
Non-Cytoplasmic	154	170	0.90
Transmembrane Helix	171	191	0.93
Cytoplasmic	192	226	0.96
Transmembrane Helix	227	248	0.93
Non-Cytoplasmic	249	275	0.90
Transmembrane Helix	276	298	0.90
Cytoplasmic	299	309	0.97