YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|65318645, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.36
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIWKVISN VISFVLFALM VCLAFVVISS KASGGDPTVM GYQFKSVLSG SMEPTFLTGS  60
   61 IIAIEPTKDG SKYQKGDVIT FKEKDEKIIT HRIIGVKDTN GKVMYETKGD NNNGPDLEPV 120
  121 LAENVIGKYA DITVPYAGYA LNYANSKAGA ALLLIIPGVF LLGYSAITIF SAIRSIDGEK 180
  181 KEKKVEQSV

Type	Start	End	Confidence
Signal Peptide	1	32	0.48
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	149	0.95
Transmembrane Helix	150	173	0.77
Cytoplasmic	174	189	0.80