YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143954, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.68
Transmembrane Helix	21	42	0.92
Non-Cytoplasmic	43	79	0.48
Transmembrane Helix	80	105	0.87
Cytoplasmic	106	134	0.60
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	194	0.68
Transmembrane Helix	195	218	0.91
Cytoplasmic	219	231	0.82
Transmembrane Helix	232	251	0.96
Non-Cytoplasmic	252	299	0.93
Transmembrane Helix	300	332	0.77
Cytoplasmic	333	349	0.95
Transmembrane Helix	350	373	0.90
Non-Cytoplasmic	374	378	0.85
Transmembrane Helix	379	400	0.79
Cytoplasmic	401	408	0.67
Transmembrane Helix	409	430	0.90
Non-Cytoplasmic	431	447	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVTKRQRLY NRFIRLNPPQ ILALGFFCLI VVGGLLLKLP FATKVHISWV DAFFTATSAA  60
   61 TVTGLGVVDT ASTFTMFGEI VIMFLIQTGG LGLMTIAILI VWVLGKKIGL RHRLLIGEAF 120
  121 NQTNIGGLVK LVKRVFIFSI CIEFIGVIFL SFRFIPEFGF GKGLYYSIFH VIASYNNAGF 180
  181 ALWPDNLTRY VGDPIINIGI CSLIVIGGLG FTVLIDIWYS RSFRKLSLHS KIMIVGTVAL 240
  241 NVIAMIVIFI LEYNNVKTLG NLPLNEKLWA SFFQGITPRT AGFNTVDYGG MEESSILFTM 300
  301 VLMFIGAGSV STGGGIKLTT FVILVTSVLS FFRKKEEIVL FQRTIKMSTV TRALAIAVAS 360
  361 QILIFAAVFV LMLTENFSFI QLLFETISAF GTVGLTMGIT AKLSAFGKCI IMFVMFCGLI 420
  421 GPLTLVFSLA RPAKQKIKYP SEDVFTG