YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261514, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRAAIPNLF TLGNLYSGFL SIGYASLGYY KSAAILVLIG MMLDSLDGRV ARLLRVDSQM  60
   61 GKELDSLADV VTFGAAPAVL MYYTSFSNYG IIGLYIAGLF PLFGAYRLAR FNVTPSSTSM 120
  121 KYFTGVPITA AGGLVAFLTL FSHTIPKIVL ITVFVTFAFL MVSRIRIPSL KDVPIPRYSI 180
  181 IITLFLVGII ITMYQTGFGN FSVFLFIAIP LYILYMLSQF LRQRPSKRAN KEK

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	30	0.67
Non-Cytoplasmic	31	31	0.39
Transmembrane Helix	32	46	0.67
Cytoplasmic	47	63	0.55
Transmembrane Helix	64	84	0.63
Non-Cytoplasmic	85	90	0.65
Transmembrane Helix	91	109	0.93
Cytoplasmic	110	119	0.87
Transmembrane Helix	120	141	0.90
Non-Cytoplasmic	142	147	0.72
Transmembrane Helix	148	167	0.92
Cytoplasmic	168	174	0.90
Transmembrane Helix	175	194	0.92
Non-Cytoplasmic	195	200	0.71
Transmembrane Helix	201	221	0.90
Cytoplasmic	222	233	0.96