YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21399603, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDNKTEKA TPQKRKKSRE EGNIARSKDL NNLFSILVLA VVVYFFGDWL GFEIANSVSV  60
   61 LFDQIGKNTD STEYFYMMGI LLLKVSAPIL ILVYAFHLFN YMIQVGFLFS SKVIKPKASR 120
  121 INPKNYFTRL FSRKSLVDIL KSLFYMGLIG YVAYVLFKKN LEKIVSMIGF NWTASLTEII 180
  181 RQIKFIFLAI LIILIVLSII DFIYQKWEYE QDIKMKKEEV KQEHKDNEGD PQVKGKRKNF 240
  241 MHAILQGTIA KKMDGATFIV NNPTHISVVL RYNKHVDAAP IVVAKGEDEL ALYIRTLARE 300
  301 QEIPMVENRP LARSLYYQVE EDETIPEDLY VAVIEVMRYL IQTNELEV

Type	Start	End	Confidence
Cytoplasmic	1	31	0.93
Transmembrane Helix	32	52	0.89
Non-Cytoplasmic	53	79	0.89
Transmembrane Helix	80	101	0.80
Cytoplasmic	102	138	0.83
Transmembrane Helix	139	157	0.78
Non-Cytoplasmic	158	182	0.71
Transmembrane Helix	183	204	0.91
Cytoplasmic	205	348	0.77