YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143670, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.94
Transmembrane Helix	12	35	0.90
Non-Cytoplasmic	36	57	0.91
Transmembrane Helix	58	84	0.84
Cytoplasmic	85	97	0.89
Transmembrane Helix	98	119	0.93
Non-Cytoplasmic	120	137	0.90
Transmembrane Helix	138	159	0.91
Cytoplasmic	160	189	0.95
Transmembrane Helix	190	211	0.92
Non-Cytoplasmic	212	243	0.94
Transmembrane Helix	244	264	0.91
Cytoplasmic	265	294	0.88
Transmembrane Helix	295	317	0.88
Non-Cytoplasmic	318	355	0.92
Transmembrane Helix	356	378	0.92
Cytoplasmic	379	391	0.87
Transmembrane Helix	392	412	0.93
Non-Cytoplasmic	413	420	0.78
Transmembrane Helix	421	441	0.80
Cytoplasmic	442	472	0.77
Transmembrane Helix	473	494	0.85
Non-Cytoplasmic	495	523	0.81
Transmembrane Helix	524	545	0.93
Cytoplasmic	546	556	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNRFVSVRQ VGMTVALLLV AMLIVIPLFL ILLSGVYENS SWNFLKPFEV MQSGGLAGIF  60
   61 LNSMLLGVLV VIGATIFAFP LAFIMSKTDV GKHSKLDIVF MIPFMTPPYI GSMGWILFMQ 120
  121 PNGYFEQFFP MLKTISSSFF SLGGMVLIMS LHLFPFLYFM LKNTLLQIGS SKEEAAAVHG 180
  181 GSFFYRLRKI ILPLLVSSYV MGALLIFVKT IAEFGTPATF GRRIGFHVLT SEIHKFISSW 240
  241 PIDFSSATAL SSLLLSACML IWYMQNVLNR KYSYAMVSGK GVKSKRYTLS IFARVVAWFY 300
  301 VIGLLIVSIG IPYFSILIAS LSKLRGGGLH VNNFTTSHYE ALFTMGSPGL EALWNSFLFS 360
  361 LITAVIAVMI GVFLALMIRK GKKSSEKWLD MCGMLPNMVP GIVMVVGLIL FWNSPYMPLS 420
  421 IYNTPVMVIV TYVVLFLPYT VQYVKASLGQ IDDSLVQAGS IFSGNYIYIF RKIIFPLIIP 480
  481 GILAGWAMTF TISIRELVAS LLVLPPSVET SATFIFAQFE QGEVSIGMAM AVVSVGLTTL 540
  541 CLLLLQHMEQ KRKGVA