YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143648, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	35	0.71
Transmembrane Helix	36	54	0.96
Cytoplasmic	55	72	0.88
Transmembrane Helix	73	97	0.85
Non-Cytoplasmic	98	106	0.72
Transmembrane Helix	107	129	0.86
Cytoplasmic	130	138	0.59
Transmembrane Helix	139	161	0.70
Non-Cytoplasmic	162	168	0.62
Transmembrane Helix	169	185	0.37
Cytoplasmic	186	191	0.42
Transmembrane Helix	192	215	0.81
Non-Cytoplasmic	216	233	0.58
Transmembrane Helix	234	253	0.89
Cytoplasmic	254	259	0.56
Transmembrane Helix	260	281	0.83
Non-Cytoplasmic	282	308	0.62
Transmembrane Helix	309	334	0.78
Cytoplasmic	335	349	0.62
Transmembrane Helix	350	375	0.83
Non-Cytoplasmic	376	416	0.66
Transmembrane Helix	417	449	0.74
Cytoplasmic	450	467	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRLPSML EIIVLLLLFL AVVFSFQTIF DLPIQLALFI SWFLVIALGL RLGFRYQELQ  60
   61 DAITKGISNG LEAILILVAV GALIGTWIAG GIVPTLIYYG LEFIHPSIFL LATLIICSIT 120
  121 SIATGTSWGT VGTAGIAMMA IGEGLGLPLP LVAGAVLSGA YFGDKLSPLS DSTVLAASMA 180
  181 KVDVIAHVRA MLVLDVPAYI ITSIMFTVAG WMYGGDNVDL NRVEFLKESL LKHFDIKIWM 240
  241 LVPAIIVIVL LAMKKPSMPT IAMGALLGAI WATVFQGMHF GDAIGTAYNG FSIQSGVEFV 300
  301 DKLLNRGGIN GMLGSVAVII FGLGFGGLLE KLGVLKVIVS KFEKKLNSAG NVTLSTLIVA 360
  361 FLANIFGCAM YVSLILTPKI MQESYDKLKI DRRVLARNSE VGGTLTSGMV PWSDNGIFMA 420
  421 GILGVATISY IPFMWLSFVS LVLAVIYGYT GKFIWYVDDA EKGKEAS