YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256055, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAADLTIWL VAGAGVLSFI SPCSLPLYPS YLSYITGVSI QDLKENRGIM QKSAIIHTVF  60
   61 FMIGFSVIFY ALGLSVSWIG ITFSSNQKLI QQIGGIFIVL MGLFMTGLFQ PKWLMAEKKV 120
  121 QYRSKSTGYI RSILVGMTYA AGWTPCVGPI FSAVLMLGAT NPEGALLYIT AYTLGFAVPF 180
  181 FVMAFFIGKI KWIVTYANVM MKIGGGMMIV TGILLYTNQM TKITAFFIRL FGGFTGF

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	32	0.76
Cytoplasmic	33	53	0.90
Transmembrane Helix	54	74	0.91
Non-Cytoplasmic	75	88	0.74
Transmembrane Helix	89	111	0.87
Cytoplasmic	112	132	0.82
Transmembrane Helix	133	155	0.87
Non-Cytoplasmic	156	165	0.78
Transmembrane Helix	166	188	0.91
Cytoplasmic	189	198	0.80
Transmembrane Helix	199	220	0.83
Non-Cytoplasmic	221	237	0.86