YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143538, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTLITGLL VTAVSTSCFI PVSAYAKEGQ TEVKTVYAQN VIAPNTLSNS IRMLGSQSPL  60
   61 IQAYGLVILQ QPDIKVNAMS SLTNHQKFAK ANVREWIDEY NPKLIDLNQE MMRYSTRFNS 120
  121 YYSKLYELAG KVNEDEQAKA DFTNAYGKLQ LQVQSIQESM EQDLLELNRF KSVLDKDSNN 180
  181 LSIKADEAIK TLQGSSGDIV KLREDIKRIQ GEIQAELTTI LNRPQEIIKG SINIGKQVFT 240
  241 ITNQTAQTKT IDFVSIGTLS NEIVNAADSQ TREAALRIQQ KQKELLPLIQ KLSQTEAEAT 300
  301 QITFVEDQVN SFTELIDRQI TTLETLLTDW KVLNNNMIQI QKNVEEGTYT DSSLLQKHFN 360
  361 QIKKVSDEMN KQTNQFEDYV TNVEVH

Type	Start	End	Confidence
Signal Peptide	1	26	0.95
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	386	0.99