YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143475, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.96
Transmembrane Helix	17	40	0.89
Cytoplasmic	41	52	0.91
Transmembrane Helix	53	74	0.90
Non-Cytoplasmic	75	94	0.88
Transmembrane Helix	95	116	0.93
Cytoplasmic	117	125	0.92
Transmembrane Helix	126	146	0.95
Non-Cytoplasmic	147	183	0.92
Transmembrane Helix	184	205	0.90
Cytoplasmic	206	217	0.92
Transmembrane Helix	218	239	0.92
Non-Cytoplasmic	240	329	0.98
Transmembrane Helix	330	352	0.93
Cytoplasmic	353	362	0.95
Transmembrane Helix	363	386	0.89
Non-Cytoplasmic	387	414	0.97
Transmembrane Helix	415	437	0.92
Cytoplasmic	438	467	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLELARIQ FASTTIFHYF FVPLSIGLAF IIALMQTLYV VKGQEIYKKM TKFWTQIFLV  60
   61 NFAVGVVTGI LQEFQFGMNW STYSRFVGDV FGPSLAIEGL LAFFIESTFL GLWVFGEDKL 120
  121 PKRIHLLCIW LLSIGTMLSA FWILTASAFM QSPVGYEMAA DGRAQMNDFL AIIQNPQLWV 180
  181 QFPHTITAAI ATGAFFIAGV SAWKITKAQE TEVFKKSFRI SIIVGTLTTA LVLFFGHAQA 240
  241 QQLIKTHPMK MAAAEALWNT SEDPAPFTVF AKIDAEKKEN SFEIQIPYML SLLSYDKFSG 300
  301 QVEGMNQIQK QYEEKYGPGD YIPPVHTMFW SFRAMVMSGT FMLLLGAYGW FLSRKDRLVE 360
  361 KTWYLKLMVY AISLPFIGNT VGWIMTEMGR QPWVVFGVMK TEDAVSPNVT FGEVLFSLVS 420
  421 FTSLYLIIGG ITIYLFVRII KGHENKKTKQ DSQSHDPFDK EEEYVIS