YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228661994, gi...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRLKWGRIT ILLVIILGIC WFLFQGTQKS VTNVEGQPLQ VAELPKTGLT EKVVPPKYIP  60
   61 PEVDAKAAMI IDASNGDIIY QHNENEAFAP ASMSKMMTAY LLLENVHNGK VRWEDPVKMS 120
  121 AKAAQTEGAR IPVQVNDTLT VKDLFHALMI ESANNSAVAL AEHMAKTEKD FVQLMNAKAK 180
  181 QLKMSDYAKF ANASGLQEPD GSETKMTAAD VANLAYHLIK DYPEILEVTH LRQSQLAFNN 240
  241 INVISTNDML NKNNKALYIE GIDGLKTGFT DSAGYCFTGT AKQGDTRIIT VVMGTKGKTK 300
  301 RFTETNKLMT YAFGLVN

Type	Start	End	Confidence
Cytoplasmic	1	6	0.51
Transmembrane Helix	7	27	0.49
Non-Cytoplasmic	28	317	0.99