YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262255, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKMTRMTQ FVKEEIANAI THGIGAILSI PALIILIIHA SKHGTASAVV AFTVYGVSMF  60
   61 LLYLFSTLLH SIHHPKVEKL FTILDHSAIY LLIAGTYTPF LLITLRGPLG WTLLAIIWTL 120
  121 AIGGIIFKIF FVRRFIKAST LCYIIMGWLI IVAIKPLYEN LTGHGFSLLL AGGILYSVGA 180
  181 IFFLWEKLPF NHAIWHLFVL GGSAMMFFCV LFYVLPTA

Type	Start	End	Confidence
Cytoplasmic	1	18	0.95
Transmembrane Helix	19	40	0.94
Non-Cytoplasmic	41	47	0.78
Transmembrane Helix	48	69	0.91
Cytoplasmic	70	81	0.85
Transmembrane Helix	82	103	0.88
Non-Cytoplasmic	104	110	0.72
Transmembrane Helix	111	132	0.92
Cytoplasmic	133	138	0.88
Transmembrane Helix	139	158	0.92
Non-Cytoplasmic	159	164	0.82
Transmembrane Helix	165	185	0.95
Cytoplasmic	186	193	0.89
Transmembrane Helix	194	215	0.96
Non-Cytoplasmic	216	218	0.83