YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52143186, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTHSKITCA SLALLIAGSS LLYITPASIV KAEPTQNVSS SLQTSMQSDR TSVKKAIRDA  60
   61 LQLGYPGILA NISKGGKTWS YTAGLADVRT KKPMKADFRF RIGSVTKTFI ATVLLQLSGE 120
  121 NRLNLDDSIE KWLPGVIQGN GYDGNQITIR QILNHTSGIA DYINSKDFDI MDIKKSYTAE 180
  181 EFVKMGISLP PDFAPGKGWS YSNTGYVILG ILIEKVTGNS YAEEVENRII EPLDLSNTFL 240
  241 PGNSSVIPGT KHARGYLQRD GASELKDVTY INPGSSDGDM ISTADDLNKF FSYLLGGKLL 300
  301 KEQQLKQMLT TVPTEREGTG YGLGILEIKL PNGVSVWGHR GGVPGFSTFV GGTLGGKHTL 360
  361 AVNLNSFNFS NPDPFKSILL AEFRK

Type	Start	End	Confidence
Signal Peptide	1	32	0.89
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	385	0.99