YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262290, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.98
Transmembrane Helix	12	33	0.93
Non-Cytoplasmic	34	45	0.73
Transmembrane Helix	46	64	0.97
Cytoplasmic	65	95	0.89
Transmembrane Helix	96	120	0.84
Non-Cytoplasmic	121	128	0.80
Transmembrane Helix	129	151	0.89
Cytoplasmic	152	160	0.84
Transmembrane Helix	161	182	0.91
Non-Cytoplasmic	183	206	0.90
Transmembrane Helix	207	226	0.90
Cytoplasmic	227	237	0.82
Transmembrane Helix	238	260	0.90
Non-Cytoplasmic	261	282	0.92
Transmembrane Helix	283	307	0.89
Cytoplasmic	308	334	0.95
Transmembrane Helix	335	354	0.94
Non-Cytoplasmic	355	360	0.79
Transmembrane Helix	361	382	0.90
Cytoplasmic	383	394	0.79
Transmembrane Helix	395	414	0.89
Non-Cytoplasmic	415	419	0.74
Transmembrane Helix	420	437	0.94
Cytoplasmic	438	451	0.84
Transmembrane Helix	452	470	0.96
Non-Cytoplasmic	471	475	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDGVVQIEK KLGFFPLIAL VVGTMVGGGV FSLPHDLAVG ANSGSIIIGW CITAMGMIPL  60
   61 ALVYQTLARK KPELEGGIYS YARAGFGEYI GFNSAWGYWL AGILGNVATI MLLFSTLGYF 120
  121 FPIFKGGNSV ASIVGASLLL WTLHFLILFG IREASIMNVI ATIGKLVPIV LFIVVMVTAF 180
  181 RWDTFTQDFW GEGTISVSSI LGQVKNTMLV TLWVFIGVEG AVVLSGRAKN SRDVGKATVL 240
  241 GLILVMSIYI LISVLSMGAM TRGELSVLET PSMGHVLEHV VGTWGAVAIN IGLVASLVGT 300
  301 LIGWFLLVSE ISHVAGKDGV FPKVFTKTNK KQTPHMALWI SNGVAQVIFI IVLFSESTYQ 360
  361 IMYFIASTSI LVPYLLSALF QFKLVITNEL KDAKVKNGSL ALIASLYSVW LIYAAGLKNL 420
  421 LLVSIVYGIG IIVYVYARKE KGNRCFTGIE RYVMWAIVVA AVTSLYMLLT GNIKM