YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118416958, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKMDTLSNK EADKGAIVSI LAYIFLSSMK IIISYITLSS ALRADGLNNL TDIGASLAIL  60
   61 IGLKISRKPR DPDHPYGHSR AEQIASLVAS FIMATVGLEV VISAIQSFLN PKQAAPNVLA 120
  121 AWVALFSAVV MYCVYLYTKK IAARTKSKSL EAAAKDNLSD ALVSIGTVVG IVGSQFQMPI 180
  181 LDPIAALIVG LIICKTAWEI FVEASHMLTD GIDPDKMEEY ADAIEHIGGV ENIVDIRARM 240
  241 YGNQTYVDIT IEVDARMDVG ESHCITDNIE AMLRKKFGIY HAHIHVEPME KEPIMT

Type	Start	End	Confidence
Cytoplasmic	1	15	0.95
Transmembrane Helix	16	38	0.88
Non-Cytoplasmic	39	45	0.78
Transmembrane Helix	46	66	0.86
Cytoplasmic	67	83	0.96
Transmembrane Helix	84	106	0.91
Non-Cytoplasmic	107	117	0.79
Transmembrane Helix	118	138	0.94
Cytoplasmic	139	156	0.95
Transmembrane Helix	157	176	0.76
Non-Cytoplasmic	177	182	0.57
Transmembrane Helix	183	202	0.68
Cytoplasmic	203	296	0.87