YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30262757, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIPRIPLG EWVDSFVASL YEHFEGLFRG FSYIIGGFVD LLTNFLIIIP AILMIILLCF  60
   61 LIWYTTRKVS LVIFTLIGLL FILNINYWAQ TMQTLALVLT SVIISIIVGI PIGILASQNE 120
  121 RFSKFLKPTL DFMQTMPAFV YLIPAITFFG VGVVPGIIAS VIFAMPPTIR FTDLGIRQVP 180
  181 EDLIEAANAF GSTASQKLFK VQLPLATGTI MAGVNQSIML SLSMVVTASL VGAPGLGVDV 240
  241 YRSVTQVNIG MGFEAGLAIV VIAIILDRIT QGFHQKRR

Type	Start	End	Confidence
Cytoplasmic	1	40	0.47
Transmembrane Helix	41	64	0.88
Non-Cytoplasmic	65	68	0.39
Transmembrane Helix	69	88	0.92
Cytoplasmic	89	94	0.41
Transmembrane Helix	95	117	0.92
Non-Cytoplasmic	118	137	0.47
Transmembrane Helix	138	164	0.86
Cytoplasmic	165	211	0.49
Transmembrane Helix	212	238	0.72
Non-Cytoplasmic	239	246	0.57
Transmembrane Helix	247	270	0.83
Cytoplasmic	271	278	0.65