YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52142504, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.89
Transmembrane Helix	37	56	0.81
Non-Cytoplasmic	57	64	0.77
Transmembrane Helix	65	87	0.88
Cytoplasmic	88	96	0.87
Transmembrane Helix	97	116	0.96
Non-Cytoplasmic	117	125	0.71
Transmembrane Helix	126	152	0.75
Cytoplasmic	153	167	0.85
Transmembrane Helix	168	190	0.89
Non-Cytoplasmic	191	197	0.87
Transmembrane Helix	198	217	0.94
Cytoplasmic	218	255	0.96
Transmembrane Helix	256	277	0.91
Non-Cytoplasmic	278	290	0.88
Transmembrane Helix	291	311	0.94
Cytoplasmic	312	321	0.87
Transmembrane Helix	322	341	0.94
Non-Cytoplasmic	342	345	0.75
Transmembrane Helix	346	367	0.88
Cytoplasmic	368	385	0.78
Transmembrane Helix	386	409	0.89
Non-Cytoplasmic	410	416	0.82
Transmembrane Helix	417	437	0.95
Cytoplasmic	438	485	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNNDLNFE PQDVNIVNPK QARKAVVATG IGNAMEWFDF GLYAYLAVIL SQLFFSGVDN  60
   61 SGLQLVLTFG TFAAAFLVRP IGGVFFGRIG DKYGRKIVLS TTIILMAFST LFIALLPTYE 120
  121 QIGVWAPILL LVARMIQGFS TGGEYSGAMV YIAESSPDKK RGILGSGLEI GTLSGYIAAS 180
  181 VIVTILTLLL TDEQMLSWGW RIPFLIAAPI GLVGLYLRRH LDESPIFEEM EKAQEESEDN 240
  241 EQFSFMDIIK YHKKDFLLST VIVAFFNITN YMILSYIPSY LTQVLKVEET TGLLIISITM 300
  301 ALMIPLALYF GKLSDKIGNK RVVQIGLLGL TVFAIPAFLL IGNGHIAAIF AGIFVLGFFL 360
  361 SVYEGTLPSL LPSLFFTDVR YRALSISFNI SVSIFGGTTP LVCSYLVHAT GNPLAPAFYL 420
  421 TGVSIIGLVV FSVLFVTTSG RALKGSYPTV ETKKEAHQIA KEDPEETLWW HEESLEIEAG 480
  481 KNASI