YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51975858, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWWKSRDKQ VKKNNIQSKT KQEYKPSQNT IVHFTNDFAS NLELIKQQIG HNSDVRFRKF  60
   61 NIGRTDIQAG IVFVDGLSDK EIIDKHIMKL LMDDFSDEYK NESSYVEGTV SKEYIKNKVL 120
  121 TISEVAEVHY IKDLIPKVLI GSTALLIDGL ADVFILGTTK ANKRNIEEPV SEALVRGPRV 180
  181 GFTEVLSDNT SLLRRHCADE SLSLVKLPVG ERAKKELVVA FINDLASTEL VDEIKNRIQK 240
  241 IDIDSVLESG YIEQLIEDNY LSPFPQIQNT ERPDRVISAL MEGRVAILLD GTPFVLIAPV 300
  301 TFSMLLQSPE DYYERWLPGT LLRLLRFMTA FVSLFAPALY ISFISFHPGL IPTKLAISII 360
  361 GSREGVPFPA LIEALIMEVA IEVLREAGLR LPKPIGPAMG IVGGLIIGQA AVEAGIVSPI 420
  421 MVIVVAVTAI SSFTIPQYSV GITLRILRFV AMFCAAIFGL YGVILFFLLL CSHLVKLKSF 480
  481 GVPYTSPAVP YRFSDWKDFM VRMPLKIMRR RPKIMHTKKT IRKR

Type	Start	End	Confidence
Cytoplasmic	1	284	0.60
Transmembrane Helix	285	306	0.75
Non-Cytoplasmic	307	323	0.47
Transmembrane Helix	324	347	0.85
Cytoplasmic	348	393	0.51
Transmembrane Helix	394	412	0.77
Non-Cytoplasmic	413	415	0.52
Transmembrane Helix	416	440	0.77
Cytoplasmic	441	448	0.59
Transmembrane Helix	449	470	0.94
Non-Cytoplasmic	471	524	0.67