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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|52142108, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIMEKNIQ QEKDKVKPVF YDPKGRRNIA FISFLCISIV SVSVVFYFFF QSIFSTPEIP  60
   61 NMNTAVQQDN KLVPINQKLS DQQLKKEEFK PNTETKDNKN LVNSPKDSKQ RKEVYGFYVN 120
  121 WDENSTASLK ENIDSLTTLV PEWYHLKADL TIRSEMKPEI VKLAEKNQVK IMPLLTNYTE 180
  181 EASGPDSGLI HKLLNSSNDV KTKLINDLVK QVEKNRFAGI NIDFEAVPES DRENLTNFMK 240
  241 ELTTVFHKHD LLVTQDVPAN DKAFDYSVLA KIIDRMIVMM YDEHYGAGEP GPIASNKWFQ 300
  301 HSLKELNIPS NKLVVAFGNY GYDWKVNSKE PAKSLTFSEV MAMAHNSDMN IQWDKMSGNP 360
  361 YFRYKTGDKE HTAWFLDGVT LYNQVKIAMD NNAKGVALWR LGAEDPTIWK VLKNPIEAQK 420
  421 NPDVLHKITS LDEVNYSGQG EILQIENEKQ NGLRDFKVGK DGYLTDEVYQ TLPSAYEVQR 480
  481 YGKPKGKQVV LTFDDGPDPK YTPEILDILK ENKIKAAFFV LGENAQLNPS IVKRIYDEGH 540
  541 EIGNHTFKHP NVADTSLLRT KVELNTTQRL IQEITGHSTV LFRPPYEADA NPDSSNEILP 600
  601 ILRAQNMNYT MVAEKVDPED WATPSTNELV KRALNPVYKG EGNIILLHDA GGNRTHTVEA 660
  661 LPIIIKELKK HGYSFVTISD LMNKERDEIM PPVSSEGEQY LLYNKAVFSG AGYFKHILTT 720
  721 IFYIAIGLGI FRFLFLIYFA WKQKRKTLSR SIHSSYQPFV SVVIAAYNEE KVIAKTIRSI 780
  781 LDSKYGEFEV IVVDDGSTDG TSKVMQETFY KHPKVRFIQK ENGGKSSAMN LGFQQSRGEI 840
  841 IVTLDADTII AQDAISLMVR HFEDQNVAAV SGNVKVGNRR NLLTTWQHVE YITGFNLERR 900
  901 AFDELNCITV VPGAIGAWRK KNVVESGYLS EDTLAEDTDL TITFLRQGHR IVYEEKAYAF 960
  961 TESPEDVKSL IKQRYRWSYG TLQCLWKHRK ALCNSKHKTL GFIALPNMWL FQYVLQFIAP1020
 1021 FADILMIMGL FSSDPLKVLG FYFVFFLMDL LASLFAFKLE EENPKPLVWL ILQRFIYRQF1080
 1081 MTYVVVKSIF SSIRGIAVGW NKLKRVGSVE HSTEHKEAS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle