YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263516, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFHKPEQIA ELVIEAGVQK VSQTLPAMLI LGFLGGAFIS LGFLLNIRVL GNLPERWGSL  60
   61 VNVLGGAVFP VGLMLVVLAG GELITGNMMS MSMALYAKKI TFVSVLNNWI WITFMNFVGA 120
  121 IFVAYCFGHL GGLTEGDYLN KTVAIAEGKL HESFGRTLIL AIGCNWLVCL ALWLAYGTSD 180
  181 FVGKIIGIWI PIMAFVVIGF QQVVANMFVI SAVIFAGHLT WMDLARNFVP VFIGNVIGGA 240
  241 GFVGFAYYAC YQKQHSNMK

Type	Start	End	Confidence
Cytoplasmic	1	24	0.68
Transmembrane Helix	25	47	0.88
Non-Cytoplasmic	48	62	0.62
Transmembrane Helix	63	86	0.85
Cytoplasmic	87	106	0.60
Transmembrane Helix	107	129	0.87
Non-Cytoplasmic	130	153	0.70
Transmembrane Helix	154	177	0.87
Cytoplasmic	178	184	0.65
Transmembrane Helix	185	216	0.77
Non-Cytoplasmic	217	227	0.65
Transmembrane Helix	228	251	0.90
Cytoplasmic	252	259	0.81