YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51975240, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	301	0.52
Transmembrane Helix	302	322	0.92
Cytoplasmic	323	330	0.47
Transmembrane Helix	331	355	0.85
Non-Cytoplasmic	356	371	0.47
Transmembrane Helix	372	397	0.85
Cytoplasmic	398	414	0.49
Transmembrane Helix	415	435	0.91
Non-Cytoplasmic	436	451	0.44
Transmembrane Helix	452	476	0.78
Cytoplasmic	477	492	0.37
Transmembrane Helix	493	517	0.83
Non-Cytoplasmic	518	528	0.38
Transmembrane Helix	529	548	0.45
Cytoplasmic	549	554	0.72
Transmembrane Helix	555	577	0.87
Non-Cytoplasmic	578	593	0.81
Transmembrane Helix	594	614	0.95
Cytoplasmic	615	619	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITDLLKRD TVIMNLTASN KEAVIDELVE KLNGANRLNS KVEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKEETDIEV AKPEGNEPYV LAVTACPTGI 180
  181 AHTYMAADSL KAKAAELGIV IKVETNGSTG IKNGLTKEDI ERATAIIVAA DKQVEMNRFA 240
  241 GKHVIQVPVA DGIRKTEKLL NRAVKQDAPI FKGVKEDGKA ENTEKENGLG IYKHLMNGVS 300
  301 NMLPFVVGGG ILIALAFSFG GIKAEGPLAE LFMSIGGGGT GAFLFLVPIL AGFIASSIAD 360
  361 RPGFMPGVVG GFLAAHANAG FLGGLIAGFL AGYVVLGLKR LFSGLPVQLE GIKPVLLYPV 420
  421 FGLLITGVVM QKVVIPPVVA LNEMLTGWLN GLNGTNAILL GLILGAMMAI DMGGPINKAA 480
  481 FTFGIAAIEA QNFGVHSAVM AGGMVPPLAI ALATTFFKSK FTEAERKSGL TNYIMGASFI 540
  541 TEGAIPFAAA DPVRVIVSCV VGSSIAGALS MLFQITLPAP HGGLFVIALV NKPVLYIFSI 600
  601 LIGAVVSALM MGIWKKKVK