YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.94
Transmembrane Helix	13	35	0.89
Non-Cytoplasmic	36	42	0.69
Transmembrane Helix	43	61	0.91
Cytoplasmic	62	89	0.80
Transmembrane Helix	90	112	0.81
Non-Cytoplasmic	113	118	0.83
Transmembrane Helix	119	140	0.91
Cytoplasmic	141	149	0.90
Transmembrane Helix	150	173	0.90
Non-Cytoplasmic	174	194	0.88
Transmembrane Helix	195	217	0.89
Cytoplasmic	218	235	0.92
Transmembrane Helix	236	257	0.94
Non-Cytoplasmic	258	277	0.89
Transmembrane Helix	278	300	0.90
Cytoplasmic	301	325	0.90
Transmembrane Helix	326	348	0.87
Non-Cytoplasmic	349	354	0.82
Transmembrane Helix	355	377	0.92
Cytoplasmic	378	395	0.96
Transmembrane Helix	396	419	0.92
Non-Cytoplasmic	420	425	0.80
Transmembrane Helix	426	444	0.96
Cytoplasmic	445	464	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKNLKKDLK IRHITMISIG GVIGAGLFVG SGAVVHSAGP GSIVSYALAG LLVVFVMRML  60
   61 GEMAAINPTS GSFATYAREA IGPWAGYTIG WLYWFFWVIV IAIEATAGAG IIQYWIPEIP 120
  121 LWLLSLILTI LLTLTNVFSV KSFGEFEYWF SFIKVISIVL FLCLGLAVIL GFVPGTEAPG 180
  181 TSNLVGQGGF MPNGISSVLL GITVVIFSFM GSEIVAVAAG ESAEPVKAVK TATNSVIWRI 240
  241 LVFFIGSIAV VVTLLPWNSA NILKSPFVAV LEHIGIPAAA QIMNFIVLTA VLSCLNSGLY 300
  301 TNSRMLFSMA ERGDAPKAFL KLNSSGVPVR AVLFGTFFAY IGVVFSYISP DKVFLFLVNA 360
  361 SGGIALLVYL VIAISHLKIR KKMGRVEQQN LKVKMWFFPY VTYVTIAAII AVLIAMLAIE 420
  421 SLRSQALLTM LVTVLIIISY FIFNRNKNST VLNTKSKNEE SVRF