YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263913, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	29	0.92
Non-Cytoplasmic	30	45	0.80
Transmembrane Helix	46	66	0.88
Cytoplasmic	67	73	0.83
Transmembrane Helix	74	94	0.94
Non-Cytoplasmic	95	103	0.73
Transmembrane Helix	104	127	0.81
Cytoplasmic	128	139	0.85
Transmembrane Helix	140	159	0.90
Non-Cytoplasmic	160	181	0.80
Transmembrane Helix	182	203	0.92
Cytoplasmic	204	223	0.85
Transmembrane Helix	224	244	0.91
Non-Cytoplasmic	245	269	0.81
Transmembrane Helix	270	287	0.94
Cytoplasmic	288	298	0.79
Transmembrane Helix	299	318	0.93
Non-Cytoplasmic	319	335	0.70
Transmembrane Helix	336	357	0.92
Cytoplasmic	358	363	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTPDFILI IVTLALLTIG MIMVYSASAV WASYKMGDSF FFAKRQLLFA GLGVVAMFFI  60
   61 MKIDYWVWRT YSKVILLVCF ILLILVLIPG VGLVRGGARS WIGIGAFSIQ PSEFMKFAMI 120
  121 IFLAKFLAER QKLITSFKRG LLPALGFVFL AFGMIMLQPD LGTGTVMVGT CIIMIFISGA 180
  181 RVFHFAMFGL LGVAGFVGLI ASAPYRMKRI TSYLDPWSDP LGSGFQIIQS LLAIGPGGLF 240
  241 GLGLGQSRQK FLYLPEPQTD FIFAILSEEL GFIGGSFVLL LFSLLLWRGI RIALGAPDLY 300
  301 GTFLAVGIVA MIAIQVMINV GVVTGLMPVT GITLPFLSYG GSSLTLMLMA VGVLLNISRH 360
  361 SRY