YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258661, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.95
Transmembrane Helix	32	51	0.91
Non-Cytoplasmic	52	63	0.84
Transmembrane Helix	64	85	0.96
Cytoplasmic	86	105	0.95
Transmembrane Helix	106	126	0.94
Non-Cytoplasmic	127	131	0.72
Transmembrane Helix	132	151	0.92
Cytoplasmic	152	157	0.83
Transmembrane Helix	158	178	0.93
Non-Cytoplasmic	179	185	0.82
Transmembrane Helix	186	205	0.95
Cytoplasmic	206	228	0.77
Transmembrane Helix	229	247	0.67
Non-Cytoplasmic	248	252	0.52
Transmembrane Helix	253	274	0.87
Cytoplasmic	275	285	0.73
Transmembrane Helix	286	306	0.92
Non-Cytoplasmic	307	307	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNHATSELHD ESAVTSIPET TRLQDLKALV KMGIVNSNTL TVFTGFWLAL HFNGLSVMDN  60
   61 LDKLFFTIVG SGLVMAGVCC LNNYIDRDID PLMERTKTRP TVTGKYKPGF ALTFGLVILL 120
  121 LGFVFLLLTT PMAVLMGFIG AFTYVVLYSL WTKRKYTLNT VVGSISGAVP PLIGWAAIDP 180
  181 SLGHPIAWML FLIMFIWQIP HFLALAMKRV DEYRNAGIPM LPVVHGFEIT KRQIMIWTVC 240
  241 LLPLPFYMSG LGITFMVIAT LLNIGWIVLG FYGFRKKDDI KWSVQMFVYS LNYLTILFVS 300
  301 MIVVTFF