YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264318, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.91
Transmembrane Helix	5	23	0.94
Cytoplasmic	24	33	0.85
Transmembrane Helix	34	52	0.97
Non-Cytoplasmic	53	73	0.88
Transmembrane Helix	74	94	0.92
Cytoplasmic	95	106	0.80
Transmembrane Helix	107	129	0.92
Non-Cytoplasmic	130	183	0.96
Transmembrane Helix	184	204	0.94
Cytoplasmic	205	223	0.89
Transmembrane Helix	224	246	0.81
Non-Cytoplasmic	247	263	0.84
Transmembrane Helix	264	285	0.91
Cytoplasmic	286	295	0.77
Transmembrane Helix	296	315	0.49
Non-Cytoplasmic	316	332	0.51
Transmembrane Helix	333	359	0.69
Cytoplasmic	360	370	0.47
Transmembrane Helix	371	391	0.88
Non-Cytoplasmic	392	394	0.43
Transmembrane Helix	395	417	0.78
Cytoplasmic	418	464	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLLVGINV AVMLILVGVL YYMQRKHVSF NKRVFTALGI GIIFGLILQF IYEPTSKVII  60
   61 ESNTWFGLIG SGYVKLLQMI VMPLILVSII SAFTKLQLTK NLGKISGLII GILILTTGIA 120
  121 AAVGIAASAG FDVSATGLQQ GDAESARLKL VEERFTSIEK TTIPDKLLEL LPTNPFLDLT 180
  181 GARPTSTISV VIFAAFIGIA FIGVKRKYPE QAELFKKMLD AVYAIVMRMV TLILRLTPYG 240
  241 VLALMAKTVA GSDINAILKL GNFVLASYVA LIVMFVIHLL LIALSGLNPI QYLKKVFPVL 300
  301 TFAFTSRSSA GAMPLNIEAQ KEKLGISEGI ANFAASFGVS IGQNGCAGIY PAMLAMMVAP 360
  361 TVGIDPLQPQ FILTLIAVVA ISSFGVAGVG GGATFAALIV LSTMNLPIGI VALVISVEPL 420
  421 IDMGRTALNV SGSMTAGLIS SKWLGELDQD TYNQDDTKTG EIAS