YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52140786, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.48
Transmembrane Helix	5	24	0.79
Cytoplasmic	25	30	0.45
Transmembrane Helix	31	49	0.70
Non-Cytoplasmic	50	51	0.61
Transmembrane Helix	52	71	0.87
Cytoplasmic	72	86	0.76
Transmembrane Helix	87	107	0.87
Non-Cytoplasmic	108	113	0.76
Transmembrane Helix	114	135	0.93
Cytoplasmic	136	151	0.90
Transmembrane Helix	152	170	0.96
Non-Cytoplasmic	171	179	0.68
Transmembrane Helix	180	197	0.97
Cytoplasmic	198	204	0.85
Transmembrane Helix	205	225	0.91
Non-Cytoplasmic	226	232	0.75
Transmembrane Helix	233	255	0.90
Cytoplasmic	256	262	0.93
Transmembrane Helix	263	283	0.95
Non-Cytoplasmic	284	285	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIFLAILPA IFWGSIVLFN VKLGGGPYSQ TLGTTFGALI FSIVVYIFMK PVLTPTVIGV  60
   61 GIVSGLFWAL GQANQLKSID LMGVSRTMPI STGLQLVSTT LFGVIVFHEW STTISVILGV 120
  121 LALVCIIIGV ILTSLQSEEE KNAEQAGNFK RGIIILLIST VGYLVYVVVI RLFNVDGWSA 180
  181 LLPQAVGMVL GGILLTFKHH PFNKYAIRNI IPGLIWAAGN MFLFISQPRV GVATSFSLSQ 240
  241 MGIIISTLGG ILILGERKTK RQLTGIVVGI IFIIAAGIML GIAKS