YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259606, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.93
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQKQKCVAM LLAGGKGSRL SALTKNLAKP AVPFGGKYRI IDFTLSNCAN SGIETVGILT  60
   61 QYQPLELHNY IGIGNAWDLD RVSGGVTVLP PYAESSGVKW YTGTASAIYQ NLNYLSQYEP 120
  121 EYVLILSGDH IYKMDYSKML DYHIEKEADV SISVIEVPWD EASRFGIMNT NEEMEIVEFE 180
  181 EKPQFPRSNL ASMGIYIFNW AILKEYLEMD ARNPESSNDF GKDVLPLLLD EGKKLMAYPF 240
  241 EGYWKDVGTV KSLWEANMDL LRDETSLNLN DRDWRIYSVN PNEPPQYIAE KAKVEESLIN 300
  301 EGCVIEGDVK HSVLFQGVTV EEGSMVIDSV VMPGAKIGKN VVIERAIVGS EMVIEDGTII 360
  361 RPEKNVDDVV LIAEGK

Type	Start	End	Confidence
Signal Peptide	1	22	0.90
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	376	0.99