YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYY2_BACCZ
Protein type:	Transmembrane
Type Confidence:	0.64
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIIDELEWR GAVNQQTDEE GLRKLVEEKK ISLYCGVDPT GDSMHIGHLI PFMMMKRFQL  60
   61 AGHHPVILIG GATGTIGDPS GRQSERQLQT LEVVQHNVDA LTAQMKKLFD FGGNSEVKMV 120
  121 NNYDWTHEIN IIEFLRDYGK NFSINSMLAK DIVASRLDTG ISFTEFTYQI LQAMDFHHLY 180
  181 KKEDVQLQIG GSDQWGNITS GLDLIRKLEG HEAKVFGLTI PLLLKSDGTK FGKSAGGAVW 240
  241 LDPEKTTPFE FYQFWVNTDD RDVVKYLKYF TFLTKERIDE LAVKVETEPH KREAQKVLAE 300
  301 EMTKFVHGEE ALLQAVKITA ALFSGDIKSL TADEIEQGFK EMPTFQSSKE TKNIVEWLVD 360
  361 LGIEPSRRQA REDINNGAIS MNGEKVTDVG TDVTVENSFD GRFIIIRKGK KNYSLVKLG

Type	Start	End	Confidence
Cytoplasmic	1	59	0.63
Transmembrane Helix	60	77	0.61
Non-Cytoplasmic	78	419	0.99