YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30259932, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.83
Transmembrane Helix	14	34	0.93
Cytoplasmic	35	39	0.78
Transmembrane Helix	40	60	0.91
Non-Cytoplasmic	61	71	0.72
Transmembrane Helix	72	95	0.85
Cytoplasmic	96	113	0.78
Transmembrane Helix	114	133	0.83
Non-Cytoplasmic	134	134	0.43
Transmembrane Helix	135	162	0.74
Cytoplasmic	163	165	0.49
Transmembrane Helix	166	186	0.83
Non-Cytoplasmic	187	193	0.87
Transmembrane Helix	194	214	0.90
Cytoplasmic	215	223	0.75
Transmembrane Helix	224	245	0.89
Non-Cytoplasmic	246	251	0.74
Transmembrane Helix	252	269	0.93
Cytoplasmic	270	299	0.97
Transmembrane Helix	300	321	0.86
Non-Cytoplasmic	322	368	0.92
Transmembrane Helix	369	388	0.94
Cytoplasmic	389	407	0.84
Transmembrane Helix	408	428	0.88
Non-Cytoplasmic	429	433	0.68
Transmembrane Helix	434	456	0.84
Cytoplasmic	457	527	0.56
Transmembrane Helix	528	547	0.92
Non-Cytoplasmic	548	552	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTWTQVYDP FGNIWISAAV ALIPIIFFFL ALAVFRMKGY VAGFITVVLT ILVALFAYKM  60
   61 PFTMAMAATG YGFLYGLWPI AWIIIMSVFL YKISVKTGQF DVIRASVLSI TNDHRLLVIL 120
  121 IGFSFGAFLE GAAGFGAPVA ITAALLAGLG LNPLYAAGLC LIANTAPVAF GAMGIPITVA 180
  181 GQVTGIDPHK IGQMAGHQLP FLSLFVPFFI VFLMDGLKGV RQTWPALLVA GSSFAITQFI 240
  241 TATFLGPELP DITSALVSLV SLALFLKVWQ PKEIYQSGQA NSEAAATTAA SMPKLTIGKV 300
  301 VKAWSPFIVL TVMVVIWSQS FFKALFAPGG ALESLVFKFE IPGLHNLVMK AEPIVNKPTP 360
  361 YEAILKFDVL SATGTAILIA CLISMLILKM SVKDAAVTFK ETLSELKMPI LSIGFVLGFA 420
  421 FIANYSGLSS TLALALAGTG GLFPFFSPFL GWIGVFLTGS DTSANALFSN LQAITAQQVG 480
  481 VSEVLLVAAN TTGGVTGKMI SPQSIAIACA AVGLAGKESD LFRFTVKHSL FFVIIVGIMT 540
  541 YVQAYYLTWM IP