YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218538627, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASARSIEQ QDVNVKEIKS RPLIASIILV AGTILLALSM ALSISFGAAD ISLKTVWQAV  60
   61 FQFDGSLTHH NVIQELRMPR AIGGVVAGAF LAVSGAIMQG MTRNPLASPS LMGITDGAVF 120
  121 GIAIMYAFFP NSPYLMFVIA SFIGAAFGAS IVYGIGSSSP GGLTPVKLAL AGAAISALLG 180
  181 AISSGIALYF NLAQEVSMWN AGGVAGVKWE SINMLVPIGL VCLFIAIMMS RYITILSFGE 240
  241 EIAIGLGQNT TLIKFIGTVL VLVLTGSAVS MAGSVGFVGL VIPHMTRFLV GSDYRWVIPC 300
  301 SAVLGGLLIE CADMLSRVIN PPFETPIGAI TALIGVPFFL YLARNEGRGK M

Type	Start	End	Confidence
Cytoplasmic	1	22	0.93
Transmembrane Helix	23	48	0.85
Non-Cytoplasmic	49	79	0.81
Transmembrane Helix	80	100	0.90
Cytoplasmic	101	108	0.67
Transmembrane Helix	109	129	0.91
Non-Cytoplasmic	130	134	0.73
Transmembrane Helix	135	156	0.93
Cytoplasmic	157	167	0.72
Transmembrane Helix	168	190	0.93
Non-Cytoplasmic	191	211	0.76
Transmembrane Helix	212	235	0.87
Cytoplasmic	236	254	0.67
Transmembrane Helix	255	282	0.84
Non-Cytoplasmic	283	322	0.61
Transmembrane Helix	323	343	0.90
Cytoplasmic	344	351	0.77