YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30179060, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCVRSNPDKE NRAPVLESVR TLATSMCSSV TTTAMKLAAK GYTLRQRVRQ KLCPKIVDDD  60
   61 RDTFLRGIRP FVILGQMFGI FPIYGVTRND PKRFRLKWFS LRVILNLTVV VTALLQAYYE 120
  121 YGRLKAIGIN AKNVSSLIFF IDACLINVLF LNLATKWRSV AMKWDEVDDT FNRPPYHMQS 180
  181 WSLRKRLGVV SFTLVFLAAV EHILSIVSNV HNQMVEIKYC NWTEPNYFQH YSLRRFANIY 240
  241 LNFPYNSLSA VFFTYVSSAL TMYWNYQDIF IIMISIGLAT RFQQINNYLK ILSDGVLIPG 300
  301 EDFWIRVRTN YVAVCELLDD VDRAISWTML ISCATNLYYI CLQILHVSKK LANTVEDAYY 360
  361 GFSLGFLIVR TVIVFLSAAH IHDCAKKPLD IIMKIPNVGW CVELERFSTQ LKSEKVALSG 420
  421 MGFFSLTRQL LFSMAGTIVT YELVMLKFDQ ESESKGNIPL CTKFRRFEHV SV

Type	Start	End	Confidence
Cytoplasmic	1	97	0.62
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	133	0.90
Transmembrane Helix	134	154	0.91
Cytoplasmic	155	186	0.94
Transmembrane Helix	187	206	0.89
Non-Cytoplasmic	207	245	0.87
Transmembrane Helix	246	266	0.69
Cytoplasmic	267	326	0.71
Transmembrane Helix	327	347	0.60
Non-Cytoplasmic	348	357	0.57
Transmembrane Helix	358	381	0.70
Cytoplasmic	382	472	0.58