YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15837905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.93
Transmembrane Helix	130	149	0.90
Non-Cytoplasmic	150	155	0.70
Transmembrane Helix	156	173	0.93
Cytoplasmic	174	184	0.81
Transmembrane Helix	185	203	0.95
Non-Cytoplasmic	204	209	0.71
Transmembrane Helix	210	228	0.92
Cytoplasmic	229	247	0.72
Transmembrane Helix	248	269	0.86
Non-Cytoplasmic	270	280	0.85
Transmembrane Helix	281	299	0.90
Cytoplasmic	300	305	0.80
Transmembrane Helix	306	324	0.85
Non-Cytoplasmic	325	329	0.80
Transmembrane Helix	330	349	0.90
Cytoplasmic	350	356	0.81
Transmembrane Helix	357	378	0.87
Non-Cytoplasmic	379	393	0.90
Transmembrane Helix	394	414	0.94
Cytoplasmic	415	420	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAPLLSPA LSTSYAQRVA FVAEIAGRLH TYGTTAQRLE ASLVALSQQL GLDCEPWSNP  60
   61 TGIILSFSDP AKAIGSSDIT RVIRLAPGEN DLYKLSVADN VAQAVASGRM SISQGHTALR 120
  121 RLDRELDRRS KMMRVFGFGL AAGGVAGLWK LPWLDVATAA TVGLLIGLLT QYTDHRAATR 180
  181 EASEALAALL AGFVATLVAT LIGPINLNTV IIASVVVLLP GMSLTNAVNE LSSQHWVSGT 240
  241 ARLAGALTVV FKLTVGALIA VSLCKLIGLK PQIYVAQPQP QWVEWVALLT TAYGFAVLFK 300
  301 ARFRDYPWVM AAAMAGYVIA RYAGKLSGNA AEGVFLSAMV LTAAGNLFGR LMPKPGALIR 360
  361 LPGIIMLVPG STSMRGFMDV VEHQSIHVGQ DELLSVTNVV MALVAGLLFG NLLIPTRKNL 420
  421