YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15836673, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.83
Transmembrane Helix	67	85	0.83
Non-Cytoplasmic	86	88	0.48
Transmembrane Helix	89	110	0.55
Cytoplasmic	111	133	0.52
Transmembrane Helix	134	156	0.72
Non-Cytoplasmic	157	159	0.46
Transmembrane Helix	160	179	0.81
Cytoplasmic	180	184	0.84
Transmembrane Helix	185	205	0.91
Non-Cytoplasmic	206	212	0.79
Transmembrane Helix	213	234	0.85
Cytoplasmic	235	250	0.87
Transmembrane Helix	251	273	0.84
Non-Cytoplasmic	274	280	0.72
Transmembrane Helix	281	300	0.95
Cytoplasmic	301	311	0.84
Transmembrane Helix	312	331	0.91
Non-Cytoplasmic	332	333	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILNQEHEHI QVYNHHLNSF QFPLNPSSDN SPVSMAYERF TSAITLLMHW RNRLDPYWKL  60
   61 ARGDRPVGFL LLLWPTWWAL WLAAGGVPPW WTLCVFTTGI WLTRSAGCVI NDYTDRWLDP 120
  121 HVERTRIRPL VTGAVSPRNA LLMFATLMLI AFGLVLTMNQ LTVLLSVVGL FLAMTYPYLK 180
  181 RYTYLPQVYL GLAFGWGIPM AFAAIQGKVP TQAWLLYVAN ILWTTAYDTW CAMVDRDDDI 240
  241 KMGAKSTAIL FADLDLTVQG VLYTLMLFTL CLVGLRATLS HTYWISLIAA VALIGYQFII 300
  301 ARRREPTACF RAFMHNNWVG MTIFAGIALA TTH