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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54026956, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMATVGAET ATRRSAGAIW TLVVVALATF MLMLDLTVVN VALPDIRAAF GSSFSALQWI  60
   61 LDAYALGLAA VLLAAGSLAD RLGRKRVFDA GLVIFVLSSL ACGLAPNDLV LIVARFVQGL 120
  121 GGAILFAVGP ALLGHEFRGK DRGMAFGVFG GVTGLAIAFG PLIGGGLTET AGWRWIFLIN 180
  181 VPVTIAALVI GYLKVRESRS DTPPPVDWPG MITFSAGLFF LVLGFMRGEQ DGWTSLTIIG 240
  241 CFALAVVLLA VFTRLQITRP GRAMFDLSLF GSRTFNGLSA VTALCALTVM PALFLLISYV 300
  301 QNMLGYSAFA SGLRFLPLTL LLFVAAAVAG SLVTKLPPAV LVGVSQLLIA GGLLAVVLVD 360
  361 VDSAWTALIP AMILIGLGMG VFNPPRAAFS IAVTTPDKSG MASGINETFQ QAGVAIGIAA 420
  421 VGAFFQNRVA GAFTETDTAR RVFGEQVDTA GDAVAAAGPS AVLDGLPASV SGAVRAAAET 480
  481 AFVDGLRTAM VLAAVLAAVS GVIAFCTMRR SDLDPAALEN PGVPADAASA DVPTTPMPVR 540
  541 MAKHPGAVAA AQRAAQIIAE AKAEAQRVIG IDNAGDTGRT ATDARTAGKP DLGKGTRRTV 600
  601 AADRAGTAGR TTAASRTRTS EVDGAAEPRA RRGRASSGNG AGNGAGNGAE LRPGARKSAS 660
  661 PGEPAGRSSA SASASASASA ERTRSGGPRN GNAGQPNRAT GTDTEHTRQT TRSTGRTRES 720
  721 AQTTGSRTTA GDATRAAESA TANKPSTPTR STNGTRTARS SSNPTRTTPA GDPTAADAGA 780
  781 ARSRSGTAPA ARPDTRTAPT TTPAARPGDG TATTTTRTTR PGDGTATTPT TRPGDGTATT 840
  841 PTTRTDDGPA VEPGEPSAAT TAARTTRSGD GAAPRPTRQA DTAADARRPG DTATTGGAPT 900
  901 TRQTNATDAQ RTAGTGSGHA ADSTPTGSGS TPAESAGTGP AGATAESDST SDGNGGVGQR 960
  961 SRSTGGNGAT GGRHARTSGT ATDRPRATVG GPSAADRKSA RMTGDRGARE PQKTAAPENR1020
 1021 GNSGRFAPSA ARAESATEQP RAETDSAPVA GRAAQTAAAT GTPAPRTTAP RTSGGTGRHA1080
 1081 RATRTRTTAG KQSGKDGDNT ADLGTSPDDN QTPAGTTAEA RNQTAPGQTA PGQIAADQAA1140
 1141 PDQPAPNQPA PGQAAPGQAA PGQVETASTT PKDASHAGST APSTPTASAP DTAAAAPADT1200
 1201 AESPAVATTA PTTDTKRTRT RRTTRGSSTA AAKAAASAEP VPATAGTPAD SATPAETTAP1260
 1261 APQPAPEQPA APAKSSASTK PSPSTAKSTP TKSAPTKPAA TKSAPTKSAA AKSTTPKATA1320
 1321 AKSTARKRPA AKSTGAESAT GAKSSTAQKS TRSTRARSDD TGSAPEN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle