YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54018048, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKSLPPL VEPAAELSKD EIARYSRHLI IPDVGVDGQK RLKNAKVLVI GAGGLGSPAL  60
   61 LYLAAAGVGT LGIVEFDEVD SSNLQRQIIH GESDIGRPKA DSARDSILEI NSGVDVRLHK 120
  121 IRLEPENAVE LFGEYDLILD GTDNFATRYL VNDAAVLAGK PYVWGSIYRF EGQVSVFWED 180
  181 APDGRGINYR DLYPEAPPPG MVPSCAEGGV LGVLCASIGS IMVTEAIKLI TGIGDPLLGR 240
  241 LMVYDALDMT YRTIKLRRDP DRQPITELID YEAFCGVVSE EGQAAAAGST ITARELKELL 300
  301 DAGKEIELID VREPVEWDIV HIEGAKLIPK DRILSGEALS ELPQNRPIVL HCKTGIRSAE 360
  361 ALAVLKNAGF TDATHVQGGI VAWANQIDPS LPVY

Type	Start	End	Confidence
Cytoplasmic	1	47	0.81
Transmembrane Helix	48	69	0.76
Non-Cytoplasmic	70	394	0.93