YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUOHI_NOCFA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.96
Transmembrane Helix	14	36	0.90
Cytoplasmic	37	83	0.96
Transmembrane Helix	84	105	0.91
Non-Cytoplasmic	106	124	0.90
Transmembrane Helix	125	147	0.90
Cytoplasmic	148	162	0.85
Transmembrane Helix	163	184	0.89
Non-Cytoplasmic	185	193	0.74
Transmembrane Helix	194	215	0.87
Cytoplasmic	216	251	0.92
Transmembrane Helix	252	272	0.90
Non-Cytoplasmic	273	286	0.86
Transmembrane Helix	287	306	0.93
Cytoplasmic	307	320	0.83
Transmembrane Helix	321	343	0.90
Non-Cytoplasmic	344	350	0.79
Transmembrane Helix	351	371	0.95
Cytoplasmic	372	597	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPDLSLFGHD PFWLVVAKSV FLFVYIILIP LVAVLAERKV VARMQMRVGP NRVGPFGSLQ  60
   61 SIADGVKMAF KEDLVPAIVD KPIYLLAPVV SVIPAFMAFA VIPLGGEVSV AGNTTALQLT 120
  121 DMPVGVLYIL AITSIGVYGI VLAGWASGST YPLLGGLRST AQVISYEIAM ALCFAAVFLH 180
  181 AGTMATSGIV GAQHPTWFVF LLLPSFLIYC VSMVGETNRA PFDLPEAEGE LVGGFHTEYS 240
  241 SLKFAMFMLA EYVNMGTVSA LATTLFLGGW SAPWPFNLIP GADAGWWGLL WFTAKVWTFM 300
  301 FVFVWLRGTL PRLRYDQFMR LGWQLLIPVS LLWVMLVATA RLLRADGHAW ATGAQVVVGV 360
  361 ALTAAMIGLF LRAGRRPAAP PEPEPEPSGE AVFLGFPTPP VPADAHRVDN PKGGLLEPLA 420
  421 GFAVTAATMF KKPNTEFYPE QKVPTAPRYH GRHQLNRHPD GLEKCIGCEL CAWACPADAI 480
  481 YVEGADNTED ERYSPGERYG RVYQINYLRC IGCGLCIEAC PTRALTMTND YELTDDNRAD 540
  541 LIYEKDRLLA PLAPGMVAPP PAMAPGTTEA DYYLGAVTGG APAAEQPAPA GAKGGAR