YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21299185, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRYVLFSIVQ SCVPHLSDQR QKGATNLAVR HCPLDSFSQL PPTVRMDSDP EVVLVEKLEE  60
   61 DEISTDKDSG MESATGSKDE TPERKPSTPE EAPKPAEPVK PAAAPEAAPA APASSSSAAA 120
  121 PAPAAAPSGP SSSSRPSAST PPQPSKTVAR TTSANDYDDE PDESLGERLW GLTEMFPEPV 180
  181 RQFSGAVTDL TVRSVKGLYS LTCNVSWIFF TSSMVMLAPV VFEVERAQME EMQKSQQKQV 240
  241 LLGPGSAVGG GGGAPGGMPA LPPMAAAR

Type	Start	End	Confidence
Non-Cytoplasmic	1	202	0.58
Transmembrane Helix	203	222	0.66
Cytoplasmic	223	239	0.40
Transmembrane Helix	240	261	0.69
Non-Cytoplasmic	262	268	0.55