YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25521475
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGMDIRHRG PDAQPGETRT ALGNPAKPHF GFAPRIAKTN RWSIEGDPSL KMLQIFLREG  60
   61 KMQKTINLFY RILEIILVLL LAGMSIMVFV NVVMRYTMNS GINVSEELSR YFFVWLTFLG 120
  121 AVLTFRENSH MGIETLVMFL SRRARIVCMI VSNIIILGCS AIFFWGTWKQ SAINASMHAP 180
  181 VTKLSMIWVY GIGMFTGCLM FIIALERLYR YVTGGVTEDE IAQFAGENLT IEQLSER

Type	Start	End	Confidence
Cytoplasmic	1	67	0.99
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	107	0.88
Transmembrane Helix	108	126	0.90
Cytoplasmic	127	145	0.90
Transmembrane Helix	146	167	0.94
Non-Cytoplasmic	168	185	0.90
Transmembrane Helix	186	205	0.95
Cytoplasmic	206	237	0.98