YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15157590, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.84
Transmembrane Helix	82	103	0.70
Non-Cytoplasmic	104	323	0.50
Transmembrane Helix	324	351	0.80
Cytoplasmic	352	352	0.31
Transmembrane Helix	353	368	0.42
Non-Cytoplasmic	369	382	0.69
Transmembrane Helix	383	403	0.92
Cytoplasmic	404	415	0.66
Transmembrane Helix	416	433	0.78
Non-Cytoplasmic	434	462	0.82
Transmembrane Helix	463	483	0.93
Cytoplasmic	484	508	0.86
Transmembrane Helix	509	531	0.90
Non-Cytoplasmic	532	549	0.78
Transmembrane Helix	550	571	0.85
Cytoplasmic	572	580	0.64
Transmembrane Helix	581	599	0.92
Non-Cytoplasmic	600	616	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTEQACPPL PCRASPPQVG RSTRGEAPHF SSVEIERCER TLPISLLVGE MPGRTEGVSR  60
   61 IFQQRQNKRP IANRSKDPDM TIRSFLGAIF LWFTMGIAAH AVAQSDPKAL IDQLGTADFK 120
  121 QAEVLIGQIA ATGDARVVPA LEAFAAGDLY VRKSDNLVFM TKPAGSDFTL IDPLTGESAG 180
  181 SAPKAAVTKI RVNNNLRRVI RAAMGGLTLL SPERAVRLSA ADAVLKAPSA ENLELLEAAI 240
  241 SKETDNEVRT RMEEARAVSL LSSDRPLEVK KEAIATIKKL GGRDAISILM AATPSVDPSL 300
  301 KPDVDEAISS IESALAFWDY AQNVWYGLSL GSVLLLAAIG LAITFGVMGI INMAHGEMVM 360
  361 IGAYSTFMVQ EVIRSHFPGL FDWSLAIALP VAFLVTGFVG LVMERGVIRF LYGRPLETLL 420
  421 ATWGISLMLQ QGVRSIFGPT NREVGSPGWM SGSFSVGYLN FTWNRVWIVC FSLSVFFALL 480
  481 VLLKRSAFGL QMRAVTQNRR MASSMGIRTP WVDAFTFALG SGVAGLAGVA LSQIDNVSPN 540
  541 LGQSYIIDSF MVVVFGGVGN LWGTLVGALS LGVLNKFLEP TVGAVLGKIL VLVLIILFIQ 600
  601 KRPRGLFALK GRAIEA