YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15889011, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDTEDKPQ PLIEHLMELR TRLIWSLGAF FIAFIACFAV AKHLFNLLVI PYKWAVIWAG  60
   61 LDVAKSSLIY TAPQEFFFTQ IKVAMFGAMV ISFPVIASQL YKFVAPGLYK NERAAFLPFL 120
  121 IASPILFLIG AALVYFFFTP MVMWFFLAMQ QLPVDGEVAI SLMPKVSEYL SLIMTLVLSF 180
  181 GLVFQLPVVT TLLARVGILT SDWLREKRKF AIVMAFVVAA VLTPPDPMSQ IGLALPAIIL 240
  241 YEISIYMARL VERKRAAESK STELEET

Type	Start	End	Confidence
Cytoplasmic	1	22	0.93
Transmembrane Helix	23	45	0.92
Non-Cytoplasmic	46	82	0.88
Transmembrane Helix	83	103	0.89
Cytoplasmic	104	115	0.88
Transmembrane Helix	116	139	0.91
Non-Cytoplasmic	140	171	0.90
Transmembrane Helix	172	194	0.88
Cytoplasmic	195	208	0.83
Transmembrane Helix	209	224	0.94
Non-Cytoplasmic	225	230	0.74
Transmembrane Helix	231	251	0.86
Cytoplasmic	252	267	0.93