YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25519610
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRQPETCPD RAAVCCRVSR RRDRSRHKGQ IVMNTIMAAT GFLTGYIVPF ILVLSLLVFV  60
   61 HEMGHYLVGR WCGIRSTAFS IGFGPELIGF TDKRGTRWKL SAIPLGGYVK FFGDEDAASK 120
  121 SDSSGLSHMS LEERAQTLSG AKLWKRAATV AAGPIANFIL AILIFAVLFG IYGRMIADPV 180
  181 VAEVRENSAA ATAGVKPGDR LVAIDGEKVM TFEDVRRYVG IRPGTPITVT VERAGEELKL 240
  241 PMVPTRTETT DQFGNKLEMG IIGIVTDQTS GNFRHIEYSP SEAVAEGVRE TGHVITGTFN 300
  301 YIGNLVTGRM NADQLGGPVR VAQASGQMAT LGISAVIQLA AVLSVSIGLL NLMPVPVLDG 360
  361 GHLVFYAIEA IRGRPLGAGA QEVAFRIGMM MILGLMVFAT WNDISSLIG

Type	Start	End	Confidence
Cytoplasmic	1	30	0.93
Transmembrane Helix	31	58	0.83
Non-Cytoplasmic	59	149	0.58
Transmembrane Helix	150	172	0.88
Cytoplasmic	173	328	0.60
Transmembrane Helix	329	355	0.76
Non-Cytoplasmic	356	382	0.50
Transmembrane Helix	383	404	0.88
Cytoplasmic	405	409	0.48